"Nothing comes from nothing" = there are causes for what exists and there are conditions (natural laws) that everything is conditioned and governed by...cows don't pop out of thin air, because they depend on causes and conditions of the material world of matter.
As you say there, the isue is "natural" causes. I know I am being legalistic here in the framing of the words, but in the philosophical context I think that's important. I gather from Frances Wright's chapter 15 that she was concerned about a narrow focus on "causes" as being infinitely regressive unless you have a starting point (which in Epicurus' case was the eternal atoms).
Simply saying "everything has a cause" does not rule out that the cause is "God." To rule out "God" being the cause, you need a theory on what is the point of "origin" of the regression -- or you have a have firm position that there was no "origin" and that the elements are eternal.